Journal Article (81)

Journal Article
Klein, H.-U.; McCabe, C.; Gjoneska, E.; Sarah E. Sullivan, S. E.; Kaskow, B. J.; Tang, A.; Smith, R. V.; Xu, J.; Pfenning, A. R.; Bernstein, B. E. et al.; Meissner, A.; Schneider, J. A.; Mostafavi, S.; Tsai, L.-H.; Young-Pearse, T. L.; Bennett, D. A.; De Jager, P. L.: Epigenome-wide study uncovers large-scale changes in histone acetylation driven by tau pathology in aging and Alzheimer's human brains. Nature Neuroscience 22 (1), pp. 37 - 46 (2019)

Conference Paper (1)

Conference Paper
Rohrandt, C.; Kraft, N.; Gießelmann, P.; Brändl, B.; Schuldt, B. M.; Jetzek, U.; Müller, F.-J.: Nanopore SimulatION – a raw data simulator for Nanopore Sequencing. In: 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 18399242 . 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Madrid, Spain, December 03, 2018 - December 06, 2018. (2019)

Thesis - PhD (3)

Thesis - PhD
Liu, J.: Bioinformatic Reconstruction of Gene Regulatory Networks Controlling EMT and Mesoderm Formation. Dissertation (2019)
Thesis - PhD
Witte, F.: Dissecting the genetic basis of transcriptional and translational regulation in heart and liver. Dissertation, V, 108 pp. (2019)
Thesis - PhD
Ramisch, A.: Enhancer Prediction Based on Epigenomic Data. Dissertation, iv, 186 pp. (2019)

Thesis - Master (6)

Thesis - Master
Bouman, B.: Primary DNA sequence as predictor for cell-type specific enhancer activity. Master (2019)
Thesis - Master
Comak, E.: Large Structural Variations Detection in Hi-C maps. Master (2019)
Thesis - Master
Hertzberg, J.: TAD-Aware prioritization of putative pathogenic CNV´s. Master (2019)
Thesis - Master
Mitra, D.: Using alignment free methods for semi-quantative analysis of NGS data. Master (2019)
Thesis - Master
Muzychenko, E.: Studying ribosomal DNA repeats in newly assembled genomes. Master (2019)
Thesis - Master
Proft, M.: Interpreting Decisions of Deep Neural Networks to Identify Binding Preferences of Transcription Factors. Master (2019)

Thesis - Bachelor (5)

Thesis - Bachelor
Akbari Omgba, P.: Detection and analysis of tissue-specific regulatory units based on ChIP-Seq histone modification experiments. Bachelor (2019)
Thesis - Bachelor
Alavi, N.: Integrating pedigree information into linked-read based hapotyping for phasing structural variants. Bachelor (2019)
Thesis - Bachelor
Fadakar, S.: Development and Implementation of R-CODE for finding Condition-Specific. Bachelor (2019)
Thesis - Bachelor
Steiger, M.: Comparative motif enrichment analysis of experimentally identified active enhancers in mouse embryonic stem cells. Bachelor (2019)
Thesis - Bachelor
Vogler, P.: Evaluation Scaffolding based on long sequence reads – Haplotype aided scaffolging of hexaploid genomes. Bachelor (2019)

Other (2)

Despang, A.; Schöpflin, R.; Franke, M.; Ali, S.; Jerkovic, I.; Paliou, C.; Chan, W.-L.; Timmermann, B.; Wittler, L.; Vingron, M. et al.; Mundlos, S.; Ibrahim, D. M.: Functional dissection of TADs reveals non-essential and instructive roles in regulating gene expression, bioRxiv (Preprint Server) 2019, (2019)
Bridavsky, M.; Kuhl, H.; Woodruff, A.; Kornak, U.; Timmermann, B.; Mages, N.; 99 Lives Consortium; Lupiáñez, D. G.; Symmons, O.; Ibrahim, D. M.: Crowdfunded whole-genome sequencing of the celebrity cat Lil BUB identifies causal mutations for her osteopetrosis and polydactyly, bioRxiv (Preprint Server), (2019)

Preprint (1)

Lammel, D. R.; Meierhofer, D.; Johnston, P.; Mbedi, S.; Rillig, M. C.: The effects of arbuscular mycorrhizal fungi (AMF) and Rhizophagus irregularis on soil microorganisms assessed by metatranscriptomics and metaproteomics. (2019)
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