Journal Article (1119)

41.
Journal Article
Ng, M.; Verboon, L.; Issa, H.; Bhayadia, R.; Vermunt, M. W.; Winkler, R.; Schüler, L.; Alejo, O.; Schuschel, K.; Regenyi, E. et al.; Borchert, D.; Heuser, M.; Reinhardt, D.; Yaspo, M.-L.; Heckl, D.; Klusmann, J.-H.: Myeloid leukemia vulnerabilities embedded in long noncoding RNA locus MYNRL15. iScience 26 (10), 107844 (2023)
42.
Journal Article
Duss, O.; Nikolay, R.; Kraushar, M. L.: Decoding a ribosome uncertainty. Trends in Genetics 39 (9), pp. 639 - 641 (2023)
43.
Journal Article
Villanueva-Martin, G.; Acosta-Herrera, M.; Carmona, E. G.; Kerick, M.; Ortego-Centeno, N.; Callejas-Rubio, J. L.; Mages, N.; Klages, S.; Börno, S.; Timmermann, B. et al.; Bossini-Castillo, L.; Martin, J.: Non-classical circulating monocytes expressing high levels of microsomal prostaglandin E2 synthase-1 tag an aberrant IFN-response in systemic sclerosis. Journal of Autoimmunity 140, 103097 (2023)
44.
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Bressin, A.; Jasnovidova, O.; Arnold, M.; Altendorfer, E.; Trajkovski , F.; Kratz, T. A.; Handzlik, J. E.; Hnisz, D.; Mayer, A.: High-sensitive nascent transcript sequencing reveals BRD4-specific control of widespread enhancer and target gene transcription. Nature Communications 14, 4971 (2023)
45.
Journal Article
Stefanova, M. E.; Ing-Simmons, E.; Stefanov, S.; Flyamer, I.; Garcia, H. D.; Schöpflin, R.; Henssen, A. G.; Vaquerizas, J. M.; Mundlos, S.: Doxorubicin Changes the Spatial Organization of the Genome around Active Promoters. Cells 12 (15), 2001 (2023)
46.
Journal Article
Gralinska, E.; Vingron, M.: Association Plots: visualizing cluster-specific associations in high-dimensional correspondence analysis biplots. Journal of the Royal Statistical Society - Series C: Applied Statistics 72 (4), pp. 1023 - 1040 (2023)
47.
Journal Article
Hoetker, M. S.; Yagi, M.; Di Stefano, B.; Langerman, J.; Cristea, S.; Ping Wong, L.; Huebner, A. J.; Charlton, J.; Deng, W.; Haggerty, C. et al.; Sadreyev, R. I.; Meissner, A.; Michor, F.; Plath, K.; Hochedlinger, K.: H3K36 methylation maintains cell identity by regulating opposing lineage programmes. Nature Cell Biology 25, pp. 1121 - 1134 (2023)
48.
Journal Article
Christou-Kent, M.; Cuartero, S.; Garcia-Cabau, C.; Ruehle, J.; Naderi, J.; Erber, J.; Neguembor, M. V.; Plana-Carmona, M.; Alcoverro-Bertran, M.; De Andres-Aguayo, L. et al.; Klonizakis, A.; Julià-Vilella, E.; Lynch, C.; Serrano, M.; Hnisz, D.; Salvatella, X.; Graf, T.; Stik, G.: CEBPA phase separation links transcriptional activity and 3D chromatin hubs. Cell Reports 42 (8), 112897 (2023)
49.
Journal Article
Garcia-Ojalvo, J.; Bulut-Karslioglu, A.: On time: developmental timing within and across species. Development 150 (14), dev201045 (2023)
50.
Journal Article
Maji, R. K.; Czepukojc, B.; Scherer, M.; Tierling, S.; Cadenas, C.; Gianmoena, K.; Gasparoni, N.; Nordström, K.; Gasparoni, G.; Laggai, S. et al.; Yang, X.; Sinha, A.; Ebert, P.; Falk-Paulsen, M.; Kinkley, S.; Hoppstädter, J.; Chung, H.-R.; Rosenstiel, P.; Hengstler, J. G.; Walter, J.; Schulz, M. H.; Kessler, S. M.; Kiemer, A. K.: Alterations in the Hepatocyte Epigenetic Landscape in Steatosis. Epigenetics & Chromatin 16, 30 (2023)
51.
Journal Article
Sampath Kumar, A.; Tian, L.; Bolondi, A.; Aragonés Hernández, A.; Stickels, R.; Kretzmer, H.; Murray, E.; Wittler, L.; Walther, M.; Barakat, G. et al.; Haut, L.; Elkabetz, Y.; Macosko, E. Z.; Guignard, L.; Chen, F.; Meissner, A.: Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis. Nature Genetics 55 (7), pp. 1176 - 1185 (2023)
52.
Journal Article
Allou, L.; Mundlos, S.: Disruption of regulatory domains and novel transcripts as disease-causing mechanisms. BioEssays 45, 2300010 (2023)
53.
Journal Article
Guo, H.; Vuille, J. A.; Wittner, B. S.; Lachtara, E. M.; Hou, Y.; Lin, M.; Zhao, T.; Raman, A. T.; Russell, H. C.; Reeves, B. A. et al.; Pleskow, H. M.; Wu, C.-L.; Gnirke, A.; Meissner, A.; Efstathiou, J. A.; Lee, R. J.; Toner, M.; Aryee, M. J.; Lawrence, M. S.; Miyamoto, D. T.; Maheswaran, S.; Haber, D. A.: DNA hypomethylation silences anti-tumor immune genes in early prostate cancer and CTCs. Cell 186 (13), pp. 2765 - 2782 (2023)
54.
Journal Article
Gorriz, R. F.; Volkenandt, S.; Imhof, P.: Protonation-State Dependence of Hydration and Interactions in the Two Proton-Conducting Channels of Cytochrome c Oxidase. International Journal of Molecular Sciences 24 (13), 10464 (2023)
55.
Journal Article
Khaveh, N.; Schachler, K.; Berghöfer, J.; Jung, K.; Metzger, J.: Altered hair root gene expression profiles highlight calcium signaling and lipid metabolism pathways to be associated with curly hair initiation and maintenance in Mangalitza pigs. Frontiers in Genetics 14, 1184015 (2023)
56.
Journal Article
Noviello, G.; Gjaltema, R. A. F.; Schulz, E. G.: CasTuner is a degron and CRISPR/Cas-based toolkit for analog tuning of endogenous gene expression. Nature Communications 14 (1), 3225 (2023)
57.
Journal Article
Lienhard, M.; van den Beucken , T.; Timmermann, B.; Hochradel, M.; Boerno, S.; Caiment , F.; Vingron, M.; Herwig, R.: IsoTools: a flexible workflow for long-read transcriptome sequencing analysis. Bioinformatics 39 (6), btad364 (2023)
58.
Journal Article
Mehringer, S.; Seiler, E.; Droop, F.; Mitra, D.; Rahn, R.; Vingron, M.; Reinert, K.: Hierarchical Interleaved Bloom Filter: enabling ultrafast, approximate sequence queries. Genome Biology: Biology for the Post-Genomic Era 24 (1), 131 (2023)
59.
Journal Article
Dejosez, M.; Dall’Agnese, A.; Ramamoorthy, M.; Platt, J.; Yin, X.; Hogan, M.; Brosh, R.; Weintraub, A. S.; Hnisz, D.; Abraham, B. J. et al.; Young, R. A.; Zwaka, T. P.: Regulatory architecture of housekeeping genes is driven by promoter assemblies. Cell Reports 42 (5), 112505 (2023)
60.
Journal Article
Preußner, M.; Smith, H. L.; Hughes, D.; Zhang, M.; Emmerichs, A.-K.; Scalzitti, S.; Peretti, D.; Swinden , D.; Neumann, A.; Haltenhof, T. et al.; Mallucci, G. R.; Heyd, F.: ASO targeting RBM3 temperature‐controlled poison exon splicing prevents neurodegeneration in vivo. Embo Molecular Medicine 15 (5), e17157 (2023)
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