Journal Article (946)

41.
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Andergassen, D.; Smith, Z. D.; Kretzmer, H.; Rinn, J. L.; Meissner, A.: Diverse epigenetic mechanisms maintain parental imprints within the embryonic and extraembryonic lineages. Developmental Cell 56 (21), e4, pp. 2995 - 3005 (2021)
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Hetzel, S.; Gießelmann, P.; Reinert, K.; Meissner, A.; Kretzmer, H.: RLM: Fast and simplified extraction of Read-Level Methylation metrics from bisulfite sequencing data. Bioinformatics 37 (21), pp. 3934 - 3935 (2021)
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Vowinckel , J.; Hartl, J.; Marx, H.; Kerick, M.; Runggatscher, K.; Keller, M. A.; Mülleder, M.; Day, J.; Weber, M.; Rinnerthaler, M. et al.; Yu, J. S. L.; Kaur Aulakh, S.; Lehmann, A.; Mattanovich, D.; Timmermann, B.; Zhang, N.; Dunn, C. D.; MacRae, J. I.; Breitenbach, M.; Ralser, M.: The metabolic growth limitations of petite cells lacking the mitochondrial genome. Nature Metabolism 3, pp. 1521 - 1535 (2021)
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Benner, P.; Vingron, M.: Quantifying the tissue-specific regulatory information within enhancer DNA sequences. NAR: genomics and bioinformatics 3 (4), lqab095 (2021)
45.
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Melo, U. S.; Piard, J.; Fischer-Zirnsak, B.; Klever, M.-K.; Schöpflin, R.; Atta Mensah, M.; Holtgrewe, M.; Arbez-Gindre, F.; Martin, A.; Guigue, V. et al.; Gaillard, D.; Landais, E.; Roze, V.; Kremer, V.; Ramanah, R.; Cabrol, C.; Harms, F. L.; Kornak, U.; Spielmann, M.; Mundlos, S.; Van Maldergem, L.: Complete lung agenesis caused by complex genomic rearrangements with neo-TAD formation at the SHH locus. Human Genetics 140, pp. 1459 - 1469 (2021)
46.
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Kage, D.; Heinrich, K.; von Volkmann, K.; Kirsch, J.; Feher, K.; Giesecke-Thiel, C.; Kaiser , T.: Multi-angle pulse shape detection of scattered light in flow cytometry for label-free cell cycle classification. Communications Biology 4, 1144 (2021)
47.
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Heyder, N. A.; Kleinau, G.; Speck, D.; Schmidt, A.; Paisdzior, S.; Szczepek, M.; Bauer, B.; Koch, A.; Gallandi, M.; Kwiatkowski, D. et al.; Bürger, J.; Mielke, T.; Beck-Sickinger, A. G.; Hildebrand, P. W.; Spahn, C. M. T.; Hilger, D.; Schacherl, M.; Biebermann, H.; Hilal, T.; Kühnen, P.; Kobilka, B. K.; Scheerer, P.: Structures of active melanocortin-4 receptor−Gs-protein complexes with NDP-α-MSH and setmelanotide. Cell Research, 0:1–14 (2021)
48.
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Arnold, M.; Bressin, A.; Jasnovidova, O.; Meierhofer, D.; Mayer, A.: A BRD4-mediated elongation control point primes transcribing RNA polymerase II for 3′-processing and termination. Molecular Cell 81 (17), e13, pp. 3589 - 3603 (2021)
49.
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Socha, M.; Sowińska-Seidler, A.; Melo, U. S.; Kragesteen, B. K.; Franke, M.; Heinrich, V.; Schöpflin, R.; Nagel, I.; Gruchy, N.; Mundlos, S. et al.; Sreenivasan, V. K. A.; López, C.; Vingron, M.; Bukowska-Olech, E.; Spielmann, M.; Jamsheer, A.: Position effects at the FGF8 locus are associated with femoral hypoplasia. The American Journal of Human Genetics 108 (9), pp. 1725 - 1734 (2021)
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Gu, H.; Raman, A. T.; Wang, X.; Gaiti, F.; Chaligne, R.; Mohammad, A. W.; Arczewska, A. A.; Smith, Z. D.; Landau, D. A.; Aryee, M. J. et al.; Meissner, A.; Gnirke, A.: Smart-RRBS for single-cell methylome and transcriptome analysis. Nature Protocols 16, pp. 4004 - 4030 (2021)
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Yagi , M.; Ji, F.; Charlton, J.; Cristea, S.; Messemer, K.; Horwitz, N.; Di Stefano, B.; Tsopoulidis, N.; Hoetker, M. S.; Huebner, A. J. et al.; Bar-Nur, O.; Almada, A. E.; Yamamoto, M.; Patelunas, A.; Goldhamer, D. J.; Wagers, A. J.; Michor, F.; Meissner, A.; Sadreyev, R. I.; Hochedlinger, K.: Dissecting dual roles of MyoD during lineage conversion to mature myocytes and myogenic stem cells. Genes and Development 35 (17-18), pp. 1209 - 1228 (2021)
52.
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Li, Y.; Lee, H.; Heo, W. D.; Zi, Z.: Revisiting the Role of TGFβ Receptor Internalization for Smad Signaling: It is Not Required in Optogenetic TGFβ Signaling Systems. Advanced Biology, 2101008 (2021)
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Loyal, L.; Braun, J.; Henze, L.; Kruse, B.; Dingeldey, M.; Reimer, U.; Kern, F.; Schwarz, T.; Mangold, M.; Unger, C. et al.; Dörfler, F.; Kadler, S.; Rosowski, J.; Gürcan, K.; Uyar-Aydin, Z.; Frentsch, M.; Kurth, F.; Schnatbaum, K.; Eckey, M.; Hippenstiel, S.; Hocke, A.; Müller, M. A.; Sawitzki, B.; Miltenyi, S.; Friedemann, P.; Mall, M. A.; Wenschuh, H.; Voigt, S.; Drosten, C.; Lauster, R.; Lachman, N.; Sander , L.-E.; Corman, V. M.; Röhmel, J.; Meyer-Arndt, L.; Thiel, A.; Giesecke-Thiel, C.: Cross-reactive CD4+ T cells enhance SARS-CoV-2 immune responses upon infection and vaccination. Science (2021)
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Pacholewska, A.; Grimm, C.; Herling, C. D.; Lienhard, M.; Königs, A.; Timmermann, B.; Altmüller, J.; Mücke, O.; Reinhardt, H. C.; Plass, C. et al.; Herwig, R.; Hallek, M.; Schweiger, M. R.: Altered DNA Methylation Profiles in SF3B1 Mutated CLL Patients. International Journal of Molecular Sciences 22 (17), 9337 (2021)
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Jiao, L.; Eickhoff, R.; Egners, A.; Jumpertz , S.; Roth, J.; Erdem, M.; Kroh, A.; Duimel, H.; López-Iglesias, C.; Caro, P. et al.; Heij, L. R.; Schmeding, M.; Meierhofer, D.; Neumann, U. P. ..; Cramer, T.: Deletion of mTOR in liver epithelial cells enhances hepatic metastasis of colon cancer. The Journal of Pathology: an Official Journal of the Pathological Society of Great Britain and Ireland, 5768 (2021)
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Huang, Y.-H.; Chen, C.-W.; Sundaramurthy, V.; Słabicki, M.; Hao, D.; Watson, C. J.; Tovy, A.; Reyes, J. M.; Dakhova, O.; Crovetti, B. R. et al.; Galonska, C.; Lee, M.; Brunetti, L.; Zhou, Y.; Tatton-Brown, K.; Huang, Y.; Cheng, X.; Meissner, A.; Valk, P. J. M.; Van Maldergem, L.; Sanders, M. A.; Blundell, J. R.; Li, W.; Ebert, B. L.; Goodell, M. A.: Systematic profiling of DNMT3A variants reveals protein instability mediated by the DCAF8 E3 ubiquitin ligase adaptor. Cancer Discovery, CD-21-0560 (2021)
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Loske, J.; Röhmel, J.; Lukassen, S.; Stricker, S.; Magalhães, V. G.; Liebig, J.; Chua, R. L.; Thürmann, L.; Messingschlager, M.; Seegebarth, A. et al.; Timmermann, B.; Klages, S.; Ralser, M.; Sawitzki, B.; Sander, L. E.; Corman, V. M.; Conrad, C.; Laudi, S.; Binder, M.; Trump, S.; Eils, R.; Mall, M. A.; Lehmann, I.: Pre-activated antiviral innate immunity in the upper airways controls early SARS-CoV-2 infection in children. Nature Biotechnology (2021)
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Skern-Mauritzen, R.; Malde, K.; Eichner, C.; Dondrup, M.; Furmanek, T.; Besnier, F.; Komisarczuk, A. Z.; Nuhn, M.; Dalvin, S.; Edvardsen, R. B. et al.; Klages, S.; Huettel, B.; Stueber, K.; Grotmol, S.; Karlsbakk, E.; Kersey, P.; Leong, J. S.; Glover, K. A.; Reinhardt, R.; Lien, S.; Jonassen, I.; Koop, B. F.; Nilsen, F.: The salmon louse genome: Copepod features and parasitic adaptations. Genomics (2021)
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Wu, H.-J.; Landshammer, A.; Stamenova, E. K.; Bolondi, A.; Kretzmer, H.; Meissner, A.; Michor, F.: Topological isolation of developmental regulators in mammalian genomes. Nature Communications 12, 4897 (2021)
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Bulut-Karslioglu, A.; Jin, H.; Kim, Y.-K.; Cho, B.; Guzman-Ayala, M.; Williamson, A. J. K.; Hejna, M.; Stötzel, M.; Whetton, A. D.; Song, J. S. et al.; Ramalho-Santos, M.: Chd1 protects genome integrity at promoters to sustain hypertranscription in embryonic stem cells. Nature Communications 12, 4859 (2021)
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