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41.
Journal Article
283 (9), pp. 1669 - 1688 (2016)
Transcriptional signature induced by a metastasis-promoting c-Src mutant in a human breast cell line. The FEBS Journal 42.
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2016, baw052 (2016)
ToxDB: pathway-level interpretation of drug-treatment data. Database (Oxford) 43.
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526 (7571), pp. 68 - 74 (2015)
A global reference for human genetic variation. Nature 44.
Journal Article
112 (31), pp. E4236 - E4245 (2015)
Simultaneous deletion of the methylcytosine oxidases Tet1 and Tet3 increases transcriptome variability in early embryogenesis. Proceedings of the National Academy of Sciences of the United States of America 45.
Journal Article
17 (5), pp. 545 - 557 (2015)
The histone deacetylase SIRT6 controls embryonic stem cell fate via TET-mediated production of 5-hydroxymethylcytosine. Nature Cell Biology 46.
Journal Article
31 (9), pp. 1505 - 1507 (2015)
diXa: a data infrastructure for chemical safety assessment. Bioinformatics 47.
Journal Article
2015, 16:136 (2015)
Algorithms for differential splicing detection using exon arrays: a comparative assessment. BMC Genomics 48.
Journal Article
16 (4), pp. 465 - 477 (2014)
Computational modelling of drug response with applications to neuroscience. Dialogues in Clinical Neuroscience Book Chapter (3)
49.
Book Chapter
2590, pp. 237 - 272 (Eds. Peters, B. A.; Drmanac, R.). Humana Press (Springer Science+Business Media, Springer-Verlag GmbH), New York, NY (2022)
Analysis of 1276 Haplotype-Resolved Genomes Allows Characterization of Cis- and Trans-Abundant Genes. In: Haplotyping. Methods in Molecular Biology (Springer Protocols), Vol. 50.
Book Chapter
A Systems Biology Approach for Identifying Hepatotoxicant Groups Based on Similarity in Mechanisms of Action and Chemical Structure. In: In Silico Methods for Predicting Drug Toxicity (Ed. Benfenati , E.) (2016)
51.
Book Chapter
Quantitative Comparison of Large-Scale DNA Enrichment Sequencing Data. In: Statistical Genomics (Eds. Mathé, E.; Davis, S.) (2016)
Thesis - PhD (2)
52.
Thesis - PhD
Network Propagation with Node Core for Genotype-Phenotype Associations and Module Identification. Dissertation, xii, 161 pp. (2021)
53.
Thesis - PhD
Computational Analysis of Genome-wide Methylation Enrichment Experiments. Dissertation, xii, 125 pp. (2017)
Preprint (2)
54.
Preprint
Systematic assessment of long-read RNA-seq methods for transcript identification and quantification. (2023)
55.
Preprint
Long-read transcriptome sequencing analysis with IsoTools. (2021)