Max Planck Institute for Molecular Genetics

Max Planck Publications of Bulut-Karslıoğlu Lab

The following publications were published exclusively under the affiliation of the Max Planck Society. For publications by the principal investigator outside of the Max Planck Society, see the links on the lower left.

Journal Article (17)

Journal Article

Villaronga-Luque, A.; Savill, R. G.; López-Anguita, N.; Bolondi, A.; Garai, S.; Gassaloglu, S. I.; Rouatbi, R.; Schmeisser, K.; Poddar, A.; Bauer, L. et al.; Alves, T.; Traikov, S.; Rodenfels, J.; Chavakis, T.; Bulut-Karslioglu, A.; Veenvliet, J. V.: Integrated molecular-phenotypic profiling reveals metabolic control of morphological variation in a stem-cell-based embryo model. Cell Stem Cell 32 (5), pp. 759 - 777 (2025)

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Journal Article

Iyer, D. P.; Khoei , H. H.; van der Weijden, V. A.; Kagawa, H.; Pradhan, S. J.; Novatchkova, M.; McCarthy, A.; Rayon, T.; Simon, C. S.; Dunkel, I. et al.; Wamaitha, S. E.; Elder, K.; Snell , P.; Christie, L.; Schulz, E. G.; Niakan, K. K.; Rivron, N.; Bulut-Karslioglu, A.: mTOR activity paces human blastocyst stage developmental progression. Cell 187 (23), pp. 6566 - 6583 (2024)

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Journal Article

Stötzel, M.; Cheng, C.-Y.; Ilik, I. A.; Sampath Kumar, A.; Akbari-Omgba, P.; van der Weijden, V. A.; Zhang, Y.; Vingron, M.; Meissner, A.; Aktas, T. et al.; Kretzmer, H.; Bulut-Karslioglu, A.: TET activity safeguards pluripotency throughout embryonic dormancy. Nature Structural & Molecular Biology 31 (10), pp. 1625 - 1639 (2024)

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Journal Article

van der Weijden, V. A.; Bulut-Karslioglu, A.: Embryos burn fat in standby. Trends in Cell Biology 34 (9), pp. 700 - 702 (2024)

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Journal Article

Bolondi, A.; Law, B. K.; Kretzmer, H.; Gassaloglu, S. I.; Buschow, R.; Riemenschneider, C.; Yang, D.; Walther, M.; Veenvliet, J. V.; Meissner, A. et al.; Smith, Z. D.; Chan, M. M.: Reconstructing axial progenitor field dynamics in mouse stem cell-derived embryoids. Developmental Cell 59 (12), pp. 1489 - 1505 (2024)

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Journal Article

Iyer, D. P.; Moyon, L.; Ringeling, F. R.; Cheng, C.-Y.; Wittler, L.; Canzar, S.; Marsico, A.; Bulut-Karslioglu, A.: Combinatorial microRNA activity is essential for the transition of pluripotent cells from proliferation into dormancy. Genome Research 34 (4), p. 589 - 589 (2024)

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Journal Article

Rüegg, A. B.; van der Weijden, V. A.; de Sousa, J. A.; von Meyenn, F.; Pausch, H.; Ulbrich, S. E.: Developmental progression continues during embryonic diapause in the roe deer. Communications Biology 7 (1), 270 (2024)

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Journal Article

van der Weijden, V. A.; Stötzel, M.; Iyer, D. P.; Fauler, B.; Gralinska, E.; Shahraz, M.; Meierhofer, D.; Vingron, M.; Rulands, S.; Alexandrov, T. et al.; Mielke, T.; Bulut-Karslioglu, A.: FOXO1-mediated lipid metabolism maintains mammalian embryos in dormancy. Nature Cell Biology 26 (2), pp. 181 - 193 (2024)

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Journal Article

Bulut-Karslioglu, A.: The double-edged sword of bivalency. Nature Reviews Molecular Cell Biology 25 (1), Article 6 (2024)

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Journal Article

Rapakoulia, T.; Lopez Ruiz de Vargas, S.; Akbari-Omgba, P.; Laupert, V.; Ulitsky, I.; Vingron, M.: CENTRE: a gradient boosting algorithm for Cell-type-specific ENhancer-Target pREdiction. Bioinformatics 39 (11), btad687 (2023)

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Journal Article

Ravid Lustig, L.; Sampath Kumar, A.; Schwämmle, T.; Dunkel, I.; Noviello, G.; Limberg, E.; Weigert, R.; Pacini, G.; Buschow, R.; Ghauri, A. et al.; Stötzel, M.; Wittler, L.; Meissner, A.; Schulz, E. G.: GATA transcription factors drive initial Xist upregulation after fertilization through direct activation of long-range enhancers. Nature Cell Biology 25 (11), pp. 1704 - 1715 (2023)

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Journal Article

Garcia-Ojalvo, J.; Bulut-Karslioglu, A.: On time: developmental timing within and across species. Development 150 (14), dev201045 (2023)

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Journal Article

López-Anguita, N.; Gassaloglu, S. I.; Stötzel, M.; Bolondi, A.; Conkar , D.; Typou, M.; Buschow, R.; Veenvliet, J. V.; Bulut-Karslioglu, A.: Hypoxia induces an early primitive streak signature, enhancing spontaneous elongation and lineage representation in gastruloids. Development 149 (20), dev200679 (2022)

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Journal Article

Rosebrock, D.; Arora, S.; Mutukula, N.; Volkman, R.; Gralinska, E.; Balaskas, A.; Aragonés Hernández, A.; Buschow, R.; Brändl, B.; Müller, F.-J. et al.; Arndt, P. F.; Vingron, M.; Elkabetz, Y.: Enhanced cortical neural stem cell identity through short SMAD and WNT inhibition in human cerebral organoids facilitates emergence of outer radial glial cells. Nature Cell Biology 24 (6), pp. 981 - 995 (2022)

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Journal Article

Bulut-Karslioglu, A.; Jin, H.; Kim, Y.-K.; Cho, B.; Guzman-Ayala, M.; Williamson, A. J. K.; Hejna, M.; Stötzel, M.; Whetton, A. D.; Song, J. S. et al.; Ramalho-Santos, M.: Chd1 protects genome integrity at promoters to sustain hypertranscription in embryonic stem cells. Nature Communications 12 (1), 4859 (2021)

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Journal Article

Percharde, M.; Lin, C.-J.; Yin, Y.; Guan, J.; Peixoto, G. A.; Bulut-Karslioglu, A.; Biechele, S.; Huang, B.; Shen, X.; Ramalho-Santos, M.: A LINE1-Nucleolin Partnership Regulates Early Development and ESC Identity. Cell 174 (2), pp. 391 - 405 (2018)

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Journal Article

Bulut-Karslioglu, A.; Macrae, T. A.; Oses-Prieto, J. A.; Covarrubias, S.; Percharde, M.; Ku, G.; Diaz, A.; McManus, M. T.; Burlingame, A. L.; Ramalho-Santos, M.: The Transcriptionally Permissive Chromatin State of Embryonic Stem Cells Is Acutely Tuned to Translational Output. Cell Stem Cell 22 (3), pp. 369 - 383 (2018)

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Thesis - PhD (2)

Thesis - PhD

Iyer, D.: The molecular landscape of developmental pausing in mammals. Dissertation (2023)

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Thesis - PhD

López Anguita, N.: Impact of hypoxia on embryonic and extraembryonic stem cells and during differentiation via gastruloid formation. Dissertation, 106 pp. (2023)

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Review Article (2)

Review Article

Özgüldez, H. Ö.; Bulut-Karslioglu, A.: Dormancy, Quiescence, and Diapause: Savings Accounts for Life. Annual Review of Cell and Developmental Biology 40, pp. 25 - 49 (2024)

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