Publications of D. Parkhomchuk

Krawitz, P. M.; Schiska, D.; Krüger, U.; Appelt, S.; Heinrich, V.; Parkhomchuk, D.; Timmermann, B.; Millan, J. M.; Robinson, P. N.; Mundlos, S. et al.; Hecht, J.; Gross, M.: Screening for single nucleotide variants, small indels and exon deletions with a next-generation sequencing based gene panel approach for Usher syndrome. Molecular Genetics and Genomic Medicine 2 (5), pp. 393 - 401 (2014)

Colonna, V.; Ayub, Q.; Chen, Y.; Pagani, L.; Luisi, P.; Pybus, M.; Garrison, E.; Xue, Y.; Tyler-Smith, C.; 1000 Genomes Project, C. et al.; Sudbrak, R.; Albrecht, M.; Amstislavskiy, V.; Borodina, T. A.; Dahl, A.; Davydov, A.; Herwig, R.; Marquardt, P.; Mertes, F.; Nietfeld, W.; Parkhomchuk, D.; Soldatov, A. V.; Timmermann, B.; Tolzmann, M.; Lehrach, H.; Yaspo, M. L.: Human genomic regions with exceptionally high levels of population differentiation identified from 911 whole-genome sequences. Genome Biology: Biology for the Post-Genomic Era 15 (6), R88 (2014)

Weischenfeldt, J.; Simon, R.; Feuerbach, L.; Schlangen, K.; Weichenhan, D.; Minner, S.; Wuttig, D.; Warnatz, H. J.; Stehr, H.; Rausch, T. et al.; Jager, N.; Gu, L.; Bogatyrova, O.; Stutz, A. M.; Claus, R.; Eils, J.; Eils, R.; Gerhauser, C.; Huang, P. H.; Hutter, B.; Kabbe, R.; Lawerenz, C.; Radomski, S.; Bartholomae, C. C.; Falth, M.; Gade, S.; Schmidt, M.; Amschler, N.; Hass, T.; Galal, R.; Gjoni, J.; Kuner, R.; Baer, C.; Masser, S.; von Kalle, C.; Zichner, T.; Benes, V.; Raeder, B.; Mader, M.; Amstislavskiy, V.; Avci, M.; Lehrach, H.; Parkhomchuk, D.; Sultan, M.; Burkhardt, L.; Graefen, M.; Huland, H.; Kluth, M.; Krohn, A.; Sirma, H.; Stumm, L.; Steurer, S.; Grupp, K.; Sultmann, H.; Sauter, G.; Plass, C.; Brors, B.; Yaspo Lehrach, M. L.; Korbel, J. O.; Schlomm, T.: Integrative genomic analyses reveal an androgen-driven somatic alteration landscape in early-onset prostate cancer. Cancer Cell 23 (2), pp. 159 - 70 (2013)

The 1000 Genomes Project Consortium; Sudbrak, R.; Albrecht, M.; Amstislavskiy, V.; Borodina, T. A.; Dahl, A.; Davydov, A.; Herwig, R.; Marquardt, P.; Mertes, F. et al.; Nietfeld, W.; Parkhomchuk, D.; Soldatov, A.; Timmermann, B.; Tolzmann, M.; Lehrach, H.: The 1000 Genomes Project: data management and community access. Nature methods 9 (5), pp. 459 - 462 (2012)

MacArthur, D. G.; Balasubramanian, S.; Frankish, A.; 1000 Genomes Project, C.; Sudbrak, R.; Albrecht , M. W.; Amstislavskiy, V.; Borodina, T. A.; Dahl, A.; Davydov, A. et al.; Herwig, R.; Marquardt, P.; Mertes, F.; Nietfeld, W.; Parkhomchuk, D.; Soldatov, A.; Timmermann, B.; Tolzmann, M.; Lehrach, H.: A Systematic Survey of Loss-of-Function Variants in Human Protein-Coding Genes. Science 335 (6070), pp. 823 - 828 (2012)

Kruger, A.; Gruning, N. M.; Wamelink, M. M.; Kerick, M.; Kirpy, A.; Parkhomchuk, D.; Bluemlein, K.; Schweiger, M. R.; Soldatov, A.; Lehrach, H. et al.; Jakobs, C.; Ralser, M.: The pentose phosphate pathway is a metabolic redox sensor and regulates transcription during the antioxidant response. Antioxidants & Redox Signaling 15 (2), pp. 311 - 24 (2011)

Parkhomchuk, D.; Borodina, T.; Amstislavskiy, V.; Banaru, M.; Hallen, L.; Krobitsch, S.; Lehrach, H.; Soldatov, A.: Transcriptome analysis by strand-specific sequencing of complementary DNA. Nucleic Acids Research 37 (18), p. e123 - e123 (2009)

Parkhomchuk, D.; Borodina, T.; Amstislavskiy, V.; Banaru, M.; Hallen, L.; Krobitsch, S.; Lehrach, H.; Soldatov, A.: Transcriptome analysis by strand-specific sequencing of complementary DNA. Nucleic Acids Research 37 (18), p. e123 - e123 (2009)

Schweiger, M. R.; Kerick, M.; Timmermann, B.; Albrecht, M. W.; Borodina, T.; Parkhomchuk, D.; Zatloukal, K.; Lehrach, H.: Genome-wide massively parallel sequencing of formaldehyde fixed-paraffin embedded (FFPE) tumor tissues for copy-number- and mutation-analysis. PLoS ONE 4 (5), p. e5548 - e5548 (2009)