Publications of A. J. Poustka

Mann, K.; Wilt, F. H.; Poustka, A. J.: Proteomic analysis of sea urchin (Strongylocentrotus purpuratus) spicule matrix. Proteome Science 8, pp. 33 - 45 (2010)

Mann, K.; Poustka, A. J.; Mann, M.: Phosphoproteomes of Strongylocentrotus purpuratus shell and tooth matrix: identification of a major acidic sea urchin tooth phosphoprotein, phosphodontin. Proteome Science 8 (1), pp. 6 - 20 (2010)

Groth, D.; Hartmann, S.; Friemel, M.; Hill, N.; Muller, S.; Poustka, A. J.; Panopoulou, G.: Data integration using scanners with SQL output--the bioscanners project at sourceforge. Journal of Integrative Bioinformatics 7 (3), p. e122 - e122 (2010)

Hufton, A. L.; Mathia, S.; Braun, H.; Georgi, U.; Lehrach, H.; Vingron, M.; Poustka, A. J.; Panopoulou, G.: Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention. Genome Resaerch 19, pp. 2036 - 2051 (2009)

Kühn, C.; Wierling, C.; Kühn, A.; Klipp, E.; Panopoulou, G.; Lehrach, H.; Poustka, A. J.: Monte-Carlo analysis of an ODE Model of the Sea Urchin Endomesoderm Network. BMC Systems Biology 3, p. 83 - 83 (2009)

Mann, K.; Poustka, A. J.; Mann, M.: In-depth, high-accuracy proteomics of sea urchin tooth organic matrix. Proteome Science 2008 (6), p. 6:33 - 6:33 (2008)

Davis, L. C.; Morgan, A. J.; Ruas, M.; Wong, J. L.; Graef, R. M.; Poustka, A. J.; Lee, H. C.; Wessel, G. M.; Parrington, J.; Galione, A.: Ca 2+ signaling occurs via second messenger release from intraorganelle synthesis sites. Current Biology 18 (20), pp. 1612 - 1618 (2008)

Hufton, A. L.; Groth, D.; Vingron, M.; Lehrach, H.; Poustka, A. J.; Panopoulou, G.: Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement. Genome Research 18 (10), pp. 1582 - 1591 (2008)

Groth, D.; Hartmann, S.; Panopoulou, G.; Poustka, A. J.; Hennig, S.: GOblet: annotation of anonymous sequence data with Gene Ontology and pathway terms. Journal of Integrative Bioinformatics 5 (2), p. 104 - 104 (2008)

Mann, K.; Poustka, A. J.; Mann, M.: The sea urchin (Strongylocentrotus purpuratus) test and spine proteomes. Proteome Science 2008 (6), p. 6:22 - 6:22 (2008)

Hecht, J.; Stricker, S.; Wiecha, U.; Stiege, A.; Panopoulou, G.; Podsiadlowski, L.; Poustka, A. J.; Dieterich, C.; Ehrich, S.; Suvorova, J. et al.; Mundlos, S.; Seitz, V.: Evolution of a core gene network for skeletogenesis in chordates. PLoS Genetics 4 (3), p. e1000025 - e1000025 (2008)

Poustka, A. J.; Kühn, A.; Groth, D.; Weise, V.; Yaguchi, S.; Burke, R. D.; Herwig, R.; Lehrach, H.; Panopoulou, G.: A global view of gene expression in lithium and zinc treated sea urchin embryos: new components of gene regulatory networks. Genome Biology 8 (5), p. R85 - R85 (2007)

Kühn, C.; Kühn, A.; Poustka, A.; Klipp, E.: Modeling development: spikes of the sea urchin. Genome Informatics 18 (1), pp. 75 - 84 (2007)

Kühn, C.; Kühn, A.; Poustka, A.; Klipp, E.: Modeling development: spikes of the sea urchin. Genome Informatics 18 (1), pp. 75 - 84 (2007)

Lapraz, F.; Röttinger, E.; Duboc, V.; Range, R.; Duloquin, L.; Walton, K.; Wu, S.-Y.; Bradham, C.; Loza, M. A.; Hibino, T. et al.; Wilson, K.; Poustka, A.; McClay, D.; Angerer, L.; Gache, C.; Lepage, T.: RTK and TGF-β signaling pathways genes in the sea urchin genome. Developmental Biology 300 (1), pp. 132 - 152 (2006)

Hecht, J.; Kuhl, H.; Haas, S. A. ..; Bauer, S.; Poustka, A. J.; Lienau, J.; Schell, H.; Stiege, A. C.; Seitz, V.; Reinhardt, R. et al.; Duda, G. N.; Mundlos, S.; Robinson, P. N.: Gene identification and analysis of transcripts differentially regulated in fracture healing by EST sequencing in the domestic sheep. BMC Genomics 7, pp. 172 - 192 (2006)

Panopoulou, G.; Poustka, A. J.: Timing and mechanism of ancient vertebrate genome duplications – the adventure of a hypothesis. Trend in Genetics (Amsterdam) 21, pp. 559 - 567 (2005)

Flowers, V. L.; Courteau, G. R.; Poustka, A. J.; Weng, W.; Venuti, J. M.: Nodal/activin signaling establishes oral-aboral polarity in the early sea urchin embryo. Developmental Dynamics 231 (4), pp. 727 - 740 (2004)

Poustka, A. J.; Kühn, A.; Radosavljevic, V.; Wellenreuther, R.; Lehrach, H.; Panopoulou, G.: On the origin of the chordate central nervous system: expression of onecut in the sea urchin embryo. Evolution and Development 6 (4), pp. 227 - 236 (2004)

Takacs, C. M.; Amore, G.; Oliveri, P.; Poustka, A. J.; Wang, D.; Burke, R. D.; Peterson, K. J.: Expression of an NK2 homeodomain gene in the apical ectoderm defines a new territory in the early sea urchin embryo. Developmental Biology 269 (1), pp. 152 - 164 (2004)