Our publications listed in the Puplication Repository of the Max Planck Society (PuRe)

Journal Article (94)

61.
Journal Article
Gaiti, F.; Chaligne, R.; Gu, H.; Brand, R. M.; Kothen-Hill, S.; Schulman, R. C.; Grigorev, K.; Risso, D.; Kim, K.-T.; Pastore, A. et al.; Huang, K. Y.; Alonso, A.; Sheridan, C.; Omans, N. D.; Biederstedt, E.; Clement, K.; Wang, L.; Felsenfeld, J. A.; Bhavsar, E. B.; Aryee, M. J.; Allan, J. N.; Furman, R.; Gnirke, A.; Wu, C. J.; Meissner, A.; Landau, D. A.: Epigenetic evolution and lineage histories of chronic lymphocytic leukaemia. Nature 569 (7757), pp. 576 - 580 (2019)
62.
Journal Article
Mallm, J. P.; Iskar, M.; Ishaque, N.; Klett, L. C.; Kugler, S. J.; Muino, J. M.; Teif, V. B.; Poos, A. M.; Grossmann, S.; Erdel, F. et al.; Tavernari, D.; Koser, S. D.; Schumacher, S.; Brors, B.; Konig, R.; Remondini, D.; Vingron, M.; Stilgenbauer, S.; Lichter, P.; Zapatka, M.; Mertens, D.; Rippe, K.: Linking aberrant chromatin features in chronic lymphocytic leukemia to transcription factor networks. Molecular Systems Biology 15 (5), e8339 (2019)
63.
Journal Article
Gossmann, T. I.; Shanmugasundram, A.; Börno, S.; Duvaux, L.; Lemaire, C.; Kuhl, H.; Klages, S.; Roberts, L. D.; Schade, S.; Gostner, J. M. et al.; Hildebrand, F.; Vowinckel, J.; Bichet, C.; Mülleder, M.; Calvani, E.; Zelezniak, A.; Griffin, J. L.; Bork, P.; Allaine, D.; Cohas, A.; Welch, J. J.; Timmermann, B.; Ralser, M.: Ice-age climate adaptations trap the Alpine marmot in a ,state of low genetic diversity. Current Biology 29 (10), pp. 1712 - 1720 (2019)
64.
Journal Article
Mutzel, V.; Okamoto, I.; Dunkel, I.; Saitou, M.; Giorgetti, L.; Heard, E.; Schulz, E. G.: A symmetric toggle switch explains the onset of random X inactivation in different mammals. Nature Structural and Molecular Biology 26 (5), pp. 350 - 360 (2019)
65.
Journal Article
Fredrich, B.; Schmöhl, M.; Junge, O.; Gundlach, S.; Ellinghaus, D.; Pfeufer, A.; Bettecken, T.; Siddiqui, R.; Franke, A.; Wienker, T. F. et al.; Hoeppner, M. P.; Krawczak, M.: VarWatch-A stand-alone software tool for variant matching. PLoS One 14 (4), e0215618 (2019)
66.
Journal Article
Pastore, A.; Gaiti, F.; Lu, S. X.; Brand, R. M.; Kulm, S.; Chaligne, R.; Gu, H.; Huang, K. Y.; Stamenova, E. K.; Béguelin, W. et al.; Jiang, Y.; Chulman, R. C.; Kim, K.-T.; Alonso, A.; Allan, J. N.; Furman, R. R.; Gnirke, A.; Wu, C. J.; Melnick, A. M.; Meissner, A.; Bernstein, B. E.; Abdel-Wahab, O.; Landau, D. A.: Corrupted coordination of epigenetic modifications leads to diverging chromatin states and transcriptional heterogeneity in CLL. Nature Communications 10 (1), 1874 (2019)
67.
Journal Article
Linz, R.; Puhlmann, L. M.; Apostolakou, F.; Mantzou, E.; Papassotiriou, I.; Chrousos, G. P.; Engert, V.; Singer, T.: Acute psychosocial stress increases serum BDNF levels: An antagonistic relation to cortisol but no group differences after mental training. Neuropsychopharmacology (2019)
68.
Journal Article
Hoehe, M. R.; Herwig, R.; Mao , Q.; Peters , B. A.; Drmanac , R.; Church, G. M.; Huebsch, T.: Significant abundance of cis configurations of coding variants in diploid human genomes. Nucleic Acids Research 47 (6), pp. 2981 - 2995 (2019)
69.
Journal Article
Krupp, F.; Said, N.; Huang, Y.-H.; Loll, B.; Bürger, J.; Mielke, T.; Spahn, C. M.T.; Wahl, M. C.: Structural Basis for the Action of an All-Purpose Transcription Anti-termination Factor. Molecular Cell 74 (1), pp. 143 - 157 (2019)
70.
Journal Article
Gu, W.; Yildirimman, R.; Van der Stuyft, E.; Verbeeck, D.; Herzinger, S.; Satagopam, V.; Barbosa-Silva, A.; Schneider, R.; Lange, B.; Lehrach, H. et al.; Guo, Y.; Henderson, D.; Rowe, A.: Data and knowledge management in translational research: implementation of the eTRIKS platform for the IMI OncoTrack consortium. BMC Bioinformatics 20 (1), 164 (2019)
71.
Journal Article
Lam, K. C.; Chung, H.-R.; Semplicio, G.; Iyer, S. S.; Gaub, A.; Bhardwaj, V.; Holz, H.; Georgiev, P.; Akhtar, A.: The NSL complex-mediated nucleosome landscape is required to maintain transcription fidelity and suppression of transcription noise. Genes and Development 33 (7-8), pp. 452 - 465 (2019)
72.
Journal Article
Han, H.; Wu, G.; Li, Y.; Zi, Z.: eDetect: A Fast Error Detection and Correction Tool for Live Cell Imaging Data Analysis. iScience 13, pp. 1 - 8 (2019)
73.
Journal Article
Zehnder, T.; Benner, P.; Vingron, M.: Predicting enhancers in mammalian genomes using supervised hidden Markov models. BMC Bioinformatics 20 (1), 157 (2019)
74.
Journal Article
Ghanbari, M.; Lasserre, J.; Vingron, M.: The Distance Precision Matrix: computing networks from non-linear relationships. Bioinformatics 35 (6), pp. 1009 - 1017 (2019)
75.
Journal Article
Verheijen, M.; Lienhard, M.; Schrooders, Y.; Clayton, O.; Nudischer, R.; Boerno, S. T.; Timmermann, B.; Selevsek, N.; Schlapbach, R.; Gmuender, H. et al.; Gotta, S.; Geraedts, J.; Herwig, R.; Kleinjans, J.; Caiment, F.: DMSO induces drastic changes in human cellular processes and epigenetic landscape in vitro. Scientific Reports 9 (9), 4641 (2019)
76.
Journal Article
Thormann, V.; Glaser, L. V.; Rothkegel, M. C.; Borschiwer, M.; Bothe, M.; Fuchs, A.; Meijsing, S. H.: Expanding the repertoire of glucocorticoid receptor target genes by engineering genomic response elements. Life Science Alliance 2 (2), e201800283 (2019)
77.
Journal Article
Chiou, T. T.; Long, P.; Schumann-Gillett, A.; Kanamarlapudi, V.; Haas, S. A.; Harvey, K.; O'Mara, M. L.; De Blas, A. L.; Kalscheuer, V. M.; Harvey, R. J.: Mutation p.R356Q in the Collybistin Phosphoinositide Binding Site Is Associated With Mild Intellectual Disability. Frontiers in Molecular Neuroscience 12, Article 60 (2019)
78.
Journal Article
Lowy-Gallego, E.; Fairley, S.; Zheng-Bradley, X.; Ruffier, M.; Clarke, L.; Flicek, P.; 1000 Genomes Project , C.; Timmermann, B.: Variant calling on the GRCh38 assembly with the data from phase three of the 1000 Genomes Project. Wellcome Open Research (open access publishing platform) 4, 50 (2019)
79.
Journal Article
Grimm, C.; Fischer, A.; Farrelly, A. M.; Kalachand, R.; Castiglione, R.; Wasserburger, E.; Hussong, M.; Schultheis, A. M.; Altmüller, J.; Thiele, H. et al.; Reinhardt, H. C.; Hauschulz, K.; Hennessy, B. T.; Herwig, R.; Lienhard, M.; Buettner, R.; Schweiger, M. R.: Combined Targeted Re-Sequencing of Cytosine DNA Methylation and Mutations of DNA Repair Genes with Potential Use for PARP1 Inhibitor Sensitivity Testing. The Journal of Molecular Diagnostics 21 (2), pp. 198 - 213 (2019)
80.
Journal Article
Hudert, C. A.; Selinski, S.; Rudolph, B.; Bläker, H.; Loddenkemper, C.; Thielhorn, R.; Berndt, N.; Golka, K.; Cadenas, C.; Reinders, J. et al.; Henning, S.; Bufler, P.; Jansen, P. L. M.; Holzhütter, H.; Meierhofer, D.; Hengstler, J. G.; Wiegand, S.: Genetic determinants of steatosis and fibrosis progression in paediatric non‐alcoholic fatty liver disease. Liver International 39 (3), pp. 540 - 556 (2019)
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