List of publications
Journal Article (10)
1.
Journal Article
39 (11), btad687 (2023)
CENTRE: a gradient boosting algorithm for Cell-type-specific ENhancer-Target pREdiction. Bioinformatics 2.
Journal Article
26 (9), 107405 (2023)
Fluid shear stress-modulated chromatin accessibility reveals the mechano-dependency of endothelial SMAD1/5-mediated gene transcription. iScience 3.
Journal Article
72 (4), pp. 1023 - 1040 (2023)
Association Plots: visualizing cluster-specific associations in high-dimensional correspondence analysis biplots. Journal of the Royal Statistical Society - Series C: Applied Statistics 4.
Journal Article
39 (6), btad364 (2023)
IsoTools: a flexible workflow for long-read transcriptome sequencing analysis. Bioinformatics 5.
Journal Article
24 (1), 131 (2023)
Hierarchical Interleaved Bloom Filter: enabling ultrafast, approximate sequence queries. Genome Biology: Biology for the Post-Genomic Era 6.
Journal Article
55, pp. 746 - 752 (2023)
Maximum likelihood pandemic-scale phylogenetics. Nature Genetics 7.
Journal Article
14 (1), 2034 (2023)
Enhancer hijacking at the ARHGAP36 locus is associated with connective tissue to bone transformation. Nature Communications 8.
Journal Article
91 (7), pp. 980 - 990 (2023)
Prediction of protein–protein interactions using sequences ofintrinsically disordered regions. Proteins: Structure, Function, and Bioinformatics 9.
Journal Article
19 (2), e1009894 (2023)
AI reveals insights into link between CD33 and cognitive impairment in Alzheimer’s Disease. PLOS Computational Biology 10.
Journal Article
150 (17), dev201562 (2023)
Induction of kidney-related gene programs through co-option of SALL1 in mole ovotestes. Development Thesis - PhD (3)
11.
Thesis - PhD
Exploring feature identification and machine learning in predicting protein-protein interactions of disordered proteins. Dissertation (2023)
12.
Thesis - PhD
Dissecting regional heterogeneity and modeling transcriptional cascades in brain organoids. Dissertation, vii, 129 pp. (2023)
13.
Thesis - PhD
A Multi-Omics Analysis of Transcription Control by BRD4. Dissertation, ix, 205 pp. (2023)