List of publications
Journal Article (11)
1.
Journal Article
15 (6), pp. 547 - 564 (2008)
Compound Poisson Approximation of the Number of Occurrences of a Position Frequency Matrix (PFM) on Both Strands. Journal of Computational Biology: A Journal of Computational Molecular Cell Biology 2.
Journal Article
18 (10), pp. 1582 - 1591 (2008)
Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement. Genome Research 3.
Journal Article
3 (9), p. e3210 - e3210 (2008)
Transcriptional Autoregulatory Loops Are Highly Conserved in Vertebrate Evolution. PLoS One 4.
Journal Article
321 (5891), pp. 956 - 960 (2008)
A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome. Science 5.
Journal Article
3 (7), p. e2780 - e2780 (2008)
Comparative 3’UTR analysis allows identification of regulatory clusters that drive Eph/ephrin expression in cancer cell lines. PLoS One 6.
Journal Article
18 (2), p. 026113 - 026113 (2008)
Self-correcting networks: Function, robustness, and motif distributions in biological signal processing. Chaos: an Interdisciplinary Journal of Nonlinear Sciencc 7.
Journal Article
4 (6), pp. 589 - 598 (2008)
Prediction of cardiac transcription networks based on molecular data and complex clinical phenotypes. Molecular BioSystems: A New High Quality Chemical Biology Journal with A Particular Focus on the Interface between Chemistry and the -Omic Sciences and Systems Biology 8.
Journal Article
4 (3), p. e1000039 - e1000039 (2008)
Statistical Modeling of Transcription Factor Binding Affinities Predicts Regulatory Interactions. PLoS Computational Biology 9.
Journal Article
18 (7), pp. 1143 - 1149 (2008)
Mapping translocation breakpoints by next-generation sequencing. Genome Research 10.
Journal Article
9 (3), pp. 250 - 253 (2008)
The BREW workshop series: a stimulating experience in PhD education. Briefings in Bioinformatics 11.
Journal Article
24 (3), pp. 350 - 357 (2008)
Natural similarity measures between position frequency matrices with an application to clustering. Bioinformatics Book Chapter (3)
12.
Book Chapter
Fast and adaptive variable order Markov chain construction. In: Algorithms in Bioinformatics, pp. 306 - 317 (Eds. Crandall, K. A.; Lagergren, J.). Springer, Berlin / Heidelberg (2008)
13.
Book Chapter
From gene expression profiling to gene regulation. In: Modern Genome Annotation, pp. 91 - 102 (Eds. Frishman, D.; Valencia, A.). Springer, Wien (2008)
14.
Book Chapter
A biophysical approach to large-scale protein-DNA binding data. In: Modern Genome Annotation: The Biosapiens Network, pp. 91 - 102 (Eds. Frishman, D.; Valencia, A.). Springer, New York (2008)
Conference Paper (2)
15.
Conference Paper
Statistics for Co-Occurrence of DNA Motifs. 2008 International Workshop on Applied Probability, Université de Technologie de Compiègne, France, July 07, 2008 - July 10, 2008. (2008)
16.
Conference Paper
Statistical detection of co-operative transcription factors with similarity adjustment. In: Proceedings of the German Conference on Bioinformatics, GCB, pp. 96 - 105 (Ed. Andreas Beyer, M. S.). German Conference on Bioinformatics (GCB), Dresden, September 09, 2008 - September 12, 2008. GI (2008)