Jongkyu Kim

Jongkyu Kim

Main Focus

  • PhD student in the IMPRS-CBSC
  • Research Focus on SeqAn

Curriculum Vitae

  • 2009: B.S. in Information Technology, Life Sciences from Handong Global University, Pohang (South Korea)
  • 2009-2012: Software Engineer with Samsung
  • 2014: M.S. in Biological Sciences from Seoul National University (South Korea)
  • From Jan 2015: PhD studies at the IMPRS-CBSC supervised by Prof. Dr. Knut Reinert


Publications from time as IMPRS fellow

  • K Reinert, TH Dadi, M Ehrhardt, H Hauswedell, S Mehringer, R Rahn, J Kim, C Pockrandt, J Winkler, E Siragusa, G Urgese, D Weese (2017). The SeqAn C++ template library for efficient sequence analysis: A resource for programmers.
    J Biotechnol., 261: 157-168
  • J Kim and K Reinert (2017). Vaquita: Fast and Accurate Identification of Structural Variations using Combined Evidence. Workshop on Algorithmic Bioinformatics (WABI) 2017.


Publications from previous experience

  • Kim D et al. (2016). General rules for functional microRNA targeting. Nat Genet., 48 (12): 1517-1526
  • Choi S et al. (2015). Genomic Alterations in the RB Pathway Indicate Prognostic Outcomes of Early-Stage Lung Adenocarcinoma. Clin Cancer Res., 21 (11): 2613-23
  • Ryoo J et al. (2014). The Ribonuclease Activity of SAMHD1 is required for HIV-1 restriction. Nat Med., 20 (8): 936-41
  • Ahn SM et al. (2014). Genomic Portrait of Resectable Hepatocellular Carcinomas: Implications of Rb1 and Fgf19 Aberrations for Patient Stratification. Hepatology, 60 (6): 1972-82
  • Kim YK et al. (2013). TALEN-based Knockout Library for Human MicroRNAs. Nat Struct Mol Biol., 20 (12): 1458-64
  • Lee S et al. (2013). Selective Degradation of Host MicroRNAs by an Intergenic HCMV Noncoding RNA Accelerates Virus Production. Cell Host Microbe., 13 (6): 678-90


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