List of publications
Journal Article (222)
1.
Journal Article
72 (4), pp. 1023 - 1040 (2023)
Association Plots: visualizing cluster-specific associations in high-dimensional correspondence analysis biplots. Journal of the Royal Statistical Society - Series C: Applied Statistics 2.
Journal Article
26 (9), 107405 (2023)
Fluid shear stress-modulated chromatin accessibility reveals the mechano-dependency of endothelial SMAD1/5-mediated gene transcription. iScience 3.
Journal Article
IsoTools: a flexible workflow for long-read transcriptome sequencing analysis. Bioinformatics, btad364 (2023)
4.
Journal Article
24 (1), 131 (2023)
Hierarchical Interleaved Bloom Filter: enabling ultrafast, approximate sequence queries. Genome Biology: Biology for the Post-Genomic Era 5.
Journal Article
55, pp. 746 - 752 (2023)
Maximum likelihood pandemic-scale phylogenetics. Nature Genetics 6.
Journal Article
14, 2034 (2023)
Enhancer hijacking at the ARHGAP36 locus is associated with connective tissue to bone transformation. Nature Communications 7.
Journal Article
Prediction of protein–protein interactions using sequences ofintrinsically disordered regions. Proteins: Structure, Function, and Bioinformatics, prot.26486 (2023)
8.
Journal Article
82 (6) (2022)
Modularity Maximization for Graphons. SIAM Journal on Applied Mathematics 9.
Journal Article
9 (11), 221131 (2022)
Quantifying the 'end of history' through a Bayesian Markov-chain approach. Royal Society Open Science 10.
Journal Article
13, 6470 (2022)
Integration of Hi-C with short and long-read genome sequencing reveals the structure of germline rearranged genomes. Nature Communications 11.
Journal Article
Co-option of the transcription factor SALL1 in mole ovotestis formation. bioRxiv, 514220 (2022)
12.
Journal Article
185 (20), e21, pp. 3689 - 3704 (2022)
Repression and 3D-restructuring resolves regulatory conflicts in evolutionarily rearranged genomes. Cell 13.
Journal Article
32, 073108 (2022)
Topological data analysis of truncated contagion maps. Chaos 14.
Journal Article
54 (7), pp. 1037 - 1050 (2022)
Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements. Nature Genetics 15.
Journal Article
24, pp. 981 - 995 (2022)
Enhanced cortical neural stem cell identity through short SMAD and WNT inhibition in human cerebral organoids facilitates emergence of outer radial glial cells. Nature Cell Biology 16.
Journal Article
38 (10), pp. 2683 - 2691 (2022)
Deep learning identifies and quantifies recombination hotspot determinants. Bioinformatics 17.
Journal Article
434 (11), 167525 (2022)
Visualizing Cluster-specific Genes from Single-cell Transcriptomics Data Using Association Plots. Journal of Molecular Biology 18.
Journal Article
23, 67 (2022)
TADA – a Machine Learning Tool for Functional Annotation based Prioritisation of Putative Pathogenic CNVs. Genome Biology 19.
Journal Article
3, 100414 (2022)
Effect of imputation on gene network reconstruction from single-cell RNA-seq data. Patterns 20.
Journal Article
49 (21), gkab1100, pp. 12178 - 12195 (2021)
Assessing genome-wide dynamic changes in enhancer activity during early mESC differentiation by FAIRE-STARR-seq. Nucleic Acids Research (London)