List of publications
Journal Article (208)
1.
Journal Article
2022, btac234 (2022)
Deep learning identifies and quantifies recombination hotspot determinants. Bioinformatics 2.
Journal Article
Visualizing Cluster-specific Genes from Single-cell Transcriptomics Data Using Association Plots. Journal of Molecular Biology, 167525 (2022)
3.
Journal Article
23, 67 (2022)
TADA – a Machine Learning Tool for Functional Annotation based Prioritisation of Putative Pathogenic CNVs. Genome Biology 4.
Journal Article
3, 100414 (2022)
Effect of imputation on gene network reconstruction from single-cell RNA-seq data. Patterns 5.
Journal Article
49 (21), gkab1100, pp. 12178 - 12195 (2021)
Assessing genome-wide dynamic changes in enhancer activity during early mESC differentiation by FAIRE-STARR-seq. Nucleic Acids Research (London) 6.
Journal Article
40, e105862 (2021)
RIF1 and KAP1 differentially regulate the choice of inactive versus active X chromosomes. The EMBO Journal 7.
Journal Article
3 (4), lqab095 (2021)
Quantifying the tissue-specific regulatory information within enhancer DNA sequences. NAR: genomics and bioinformatics 8.
Journal Article
108 (9), pp. 1725 - 1734 (2021)
Position effects at the FGF8 locus are associated with femoral hypoplasia. The American Journal of Human Genetics 9.
Journal Article
220 (10), e202103003 (2021)
Anisotropic expansion of hepatocyte lumina enforced by apical bulkheads. The Journal of Cell Biology: JCB 10.
Journal Article
22, 191 (2021)
A trans locus causes a ribosomopathy in hypertrophic hearts that affects mRNA translation in a protein length-dependent fashion. Genome Biology 11.
Journal Article
49 (8), pp. 4402 - 4420 (2021)
Conserved DNA sequence features underlie pervasive RNA polymerase pausing. Nucleic Acids Research (London) 12.
Journal Article
2021, pp. 1 - 10 (2021)
Computing Leapfrog Regularization Paths with Applications to Large-Scale K-mer Logistic Regression. Journal of Computational Biology 13.
Journal Article
Non-coding deletions identify Maenli lncRNA as a limb-specific En1 regulator. Nature (2021)
14.
Journal Article
36 (22-23), pp. 5519 - 5521 (2020)
SVIM-asm: structural variant detection from haploid and diploid genome assemblies. Bioinformatics 15.
Journal Article
Association Plots: Visualizing associations in high-dimensional correspondence analysis biplots. bioRxiv (Preprint Server) (2020)
16.
Journal Article
370 (6513), pp. 208 - 214 (2020)
The mole genome reveals regulatory rearrangements associated with adaptive intersexuality. Science 17.
Journal Article
106 (6), pp. 872 - 884 (2020)
Hi-C Identifies Complex Genomic Rearrangements and TAD-Shuffling in Developmental Diseases. The American Journal of Human Genetics 18.
Journal Article
GenMap: Ultra-fast Computation of Genome Mappability. Bioinformatics, btaa222 (2020)
19.
Journal Article
27 (4), pp. 442 - 457 (2020)
ModHMM: A Modular Supra-Bayesian Genome Segmentation Method. Journal of Computational Biology 20.
Journal Article
12 (1), pii: E71 (2020)
Single-Cell Analysis Uncovers a Vast Diversity in Intracellular Viral Defective Interfering RNA Content Affecting the Large Cell-to-Cell Heterogeneity in Influenza A Virus Replication. Viruses