List of publications
Journal Article (10)
1.
Journal Article
8 (Suppl) (6), p. S1 - S1 (2007)
The Otto Warburg International Summer School and Workshop on Networks and Regulation. BMC Bioinformatics 2.
Journal Article
8, p. e392 - e392 (2007)
Exonization of active mouse L1s: a driver of transcriptome evolution? BMC Genomics 3.
Journal Article
23 (22), pp. 3024 - 3031 (2007)
Improved detection of overrepresentation of Gene-Ontology annotations with parent child analysis. Bioinformatics 4.
Journal Article
32 (Suppl. 1), pp. 841 - 850 (2007)
Incorporating evolution of transcription factor binding sites into annotated alignments. Journal of Bioscience 5.
Journal Article
23 (13), pp. i80 - i86 (2007)
A physical model for tiling array analysis. Bioinformatics 6.
Journal Article
14 (5), pp. 655 - 668 (2007)
Effects of Long-Range Correlations in DNA on Sequence Alignment Score Statistics. Journal of Computational Biology: A Journal of Computational Molecular Cell Biology 7.
Journal Article
23 (2), pp. e44 - e49 (2007)
Simultaneous alignment and annotation of cis-regulatory regions. Bioinformatics 8.
Journal Article
23 (2), pp. 134 - 141 (2007)
Predicting transcription factor affinities to DNA from a biophysical model. Bioinformatics 9.
Journal Article
E75, 015101 (2007)
Design and statistical properties of robust functional networks: A model study of biological signal transduction. Physical Review: E, Statistical, Nonlinear and Soft Matter Physics 10.
Journal Article
35 (Database issue), pp. D32 - D35 (2007)
Developments in CORG: a gene-centric comparative genomics resource. Nucleic Acids Research Book Chapter (1)
11.
Book Chapter
Integer linear programming approaches for non-unique probe selection. In: Discrete Mathematics and Data Mining II - DM & DM II, pp. 840 - 856 (Eds. Anthony, M.H.G.; Boros, E.; Hammer, P.L.; Kogan, A.). Elsevier, Amsterdam et al (2007)
Conference Paper (1)
12.
Conference Paper
18, pp. 109 - 118 (2007)
Using Transcription Factor Binding Site Co-Occurrence to Predict Regulatory Regions. The Seventh Annual International Workshop on Bioinformatics and Systems Biology, Institute of Medical Science, The University of Tokyo, Japan, July 31, 2007 - August 02, 2007. Genome Informatics