1. Parkhomchuk D, Borodina T, Amstislavskiy V, Banaru M, Hallen L, Krobitsch S, Lehrach H, Soldatov A. Transcriptome analysis by strand-specific sequencing of complementary DNA. Nucleic Acids Res. 2009 Jul 20. doi:10.1093/nar/gkp596

2. Schweiger MR, Kerick M, Timmermann B, Albrecht MW, Borodina T, Parkhomchuk D, Zatloukal K, Lehrach H. Genome-wide massively parallel sequencing of formaldehyde fixed-paraffin embedded (FFPE) tumor tissues for copy-number- and mutation-analysis. PLoS One. 2009;4(5):e5548. Epub 2009 May 14.

3. Dohm JC, Lottaz C, Borodina T, Himmelbauer H. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res. 2008 Sep;36(16):e105. Epub 2008 Jul 26.

4. Rosenkranz R, Borodina T, Lehrach H, Himmelbauer H. Characterizing the mouse ES cell transcriptome with Illumina sequencing. Genomics. 2008 Oct;92(4):187-94. Epub 2008 Aug 3.

5. Sultan M, Schulz MH, Richard H, Magen A, Klingenhoff A, Scherf M, Seifert M, Borodina T, Soldatov A, Parkhomchuk D, Schmidt D, O'Keeffe S, Haas S, Vingron M, Lehrach H, Yaspo ML. A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. Science. 2008 Aug 15;321(5891):956-60. Epub 2008 Jul 3.

6. Dohm JC, Lottaz C, Borodina T, Himmelbauer H. SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing. Genome Res. 2007 Nov;17(11):1697-706. Epub 2007 Oct 1.

7. Kozhekbaeva GM, Borodina TA, Borinskaia SA, Gusar VA, Feshchenko SP, Akhmetova VL, Khusainova RI, Gupalo EIu, Spitsyn VA, Grechanina EIa, Khusnutdinova K, Iankovskiĭ NK. Distribution of the HIV-1 resistance-conferring alleles (CCR5delta32, CCR2-64I, and SDF1 3'A) in Russian, Ukrainian, and Belarusian populations. Genetika. 2004 Oct;40(10):1394-401. Russian.

8. Borodina TA, Lehrach H, Soldatov AV. Ligation detection reaction-TaqMan procedure for single nucleotide polymorphism detection on genomic DNA. Anal Biochem. 2004 Oct 15;333(2):309-19.

9. Rickert AM, Borodina TA, Kuhn EJ, Lehrach H, Sperling S. Refinement of single-nucleotide polymorphism genotyping methods on human genomic DNA: amplifluor allele-specific polymerase chain reaction versus ligation detection reaction-TaqMan. Anal Biochem. 2004 Jul 15;330(2):288-97.

10. Borodina TA, Lehrach H, Soldatov AV. DNA purification on homemade silica spin-columns. Anal Biochem. 2003 Oct 1;321(1):135-7.

11. Borodina TA, Lehrach H, Soldatov AV. Ligation-based synthesis of oligonucleotides with block structure. Anal Biochem. 2003 Jul 15;318(2):309-13.

Patents:

1.Ligation-based method of analysis of single nucleotide polymorphisms on genomic DNA. EP03019521

2.Ligation-based synthesis of oligonucleotides with block structure. PCT/EP 2004/003921.

3.Parallel gel-loading procedure (appl. No. 05018950.5).

4.Method for differentiation of polynucleotide strands. EP 09008808.9