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Centers and Institutes
American Type Culture Collection (ATCC)
Comperative Human Linkage Centre (CHLC)
The Computational Biology and
Informatics Laboratory (CBIL) maintains software and databases
for computational biology
Centre National de la Recherche
Scientifique (CNRS)
US Dept. of Energy - Office of Energy
Research (ER) and
Office of Health and Environmental Research Biological and Environmental
Research Program
Deutsches Krebsforschungszentrum
(DKFZ) has a Biocomputing
Service Group
Deutsches Humangenomprojekt (DHGP)
- German Human Genome Project
European Bioinformatics Institute
(EBI)
European Molecular Biology
Laboratory (EMBL)
European
Molecular Biology Organization (EMBO)
European Molecular Biology network
(EMBnet),with national european servers
Forschungsinstitut für Molekulare
Pharmakologie (FMP)
GÉNÉTHON
Genome Sequence DataBase (GSDB)
at the National Center for Genome
Resources (NCGR)
Laboratorium für Molekulare Biologie (LMB) - GenZentrum
der Ludwig-Maximilians-Universität
München (LMU)
Glasgow
University Protein Crystallography
Harvard Biological Laboratories
- Genome Research
UK MRC Human Genome Mapping Project
(HGMP)
Integrated Genome
Database (IGD) - at DKFZ
Informatics
for Biomolecules and Genomes (INFOBIOGEN)
Lawrence Berkley
National Laboratory (LBNL) - Human/Drosophila genomic sequencing
Structural Genomics
at the Los Alamos National Laboratory Bioscience Division
Max-Delbrück-Centrum für
Molekulare Medizin Berlin-Buch (MDC)
Max-Planck-Institute for Molecular
Genetics Berlin (MPIMG)
Munich Institute for Protein
Sequences (MIPS)
National Centre for Biotechnology
Information (NCBI) of the National
Library of Medicine (NLM) of the
National Institutes of Health (NIH)
National Institute for MedicalResearch
(NIMR) of the Medical
Research Council (MRC)
National Institute of Genetics (NIG),
Japan with DNA Data Bank of Japan (DDBJ)
The Norwegian EMBnet Node
Oxford University
Pasteur Institute
Proteinstrukturfabrik
- The Protein Structure Factory (PSF)
Resource Centre - Primary
Database (RZPD) of the German Human Genome Project. (Ressourcenzentrum
im Deutschen Humangenomprojekt)
Sanger Centre
SDSC - A National Laboratory for Computational
Science and Engineering
The Institute for Genomic Research
(TIGR)
Washington University
with WashU-Merck
EST Project. Links to other sequencing centres.
The Wellcome Trust Centre for
Human Genetics
WFCC World Data Centre for Microorganisms
(WDCM)
Whitehead Institute/MIT
has Eric Lander's
MapMaker
The Wolfson Institute for
biomedical research at University
College London (UCL)
Information and Literature Databases
ATP synthase page - by Boris A. Feniouk
Information Retrieval Services
for the Max-Planck-Institutes
Argonne National Laboratory at
the University of Chicago
Encyclopedia
of E. coli Genes and Metabolism (EcoCyc)
HUM-MOLGEN is a moderated, interactive
communication and information listserver in Human Genetics.
International Union of
Pure and Applied Chemistry (IUPAC) - Organic & Biochemical Nomenclature,
Symbols & Terminology etc.
IUPAC Nomenclature
of Carbohydrates
Medical Journal Directory
PCR Station - some information on PCR
PubMed - Provides
free access to MEDLINE
Sequence Databases and Analysis, Mapping
General, species specific,
cDNA clone resources, Protein
General
The Bioinformatics Library
- BioLib
Codon usage
tabulated from GenBank (CUTG)
The Dictionary of
Cell Biology online - look up information or contribute
an article
GeneQuiz
- A system for large scale sequence analysis
ImMunoGeneTics database (IMGT)
at LIGM, Montpellier
DNA Data Bank of Japan (DDBJ) at the
National Institute of Genetics(NIG)
Japan's GenomeNet with
TFSEARCH: Enter a promoter sequence and
TFMATRIX: view factor binding sites.
GenBank (GB), the Expressed
Sequence Tag Database
dbEST, OMIM,
Taxonomy,
Genetic Codes and more at the
National Library of Medicine (NLM) of the
National Institutes of Health (NIH)
Organelle
Genome Megasequencing Program (OGMP, Canada)
Genetic Linkage Analysis
by Jurg Ott's group
Hopkins Bio-Informatics
Home Page: OWL, NRL3D, EC-Enzyme, GenQuest,
REBASE, TBASE, DOE - research activities, DSHB
- monoclonal antibodies, GDB, links, publications
In-silico.com - In silico
experiments with complete bacterial genomes
Molecular Probe
Database (MPD): Genetic probes.
Nucleic Acid Database
Project (NDP)
ORFer - Retrieval
of DNA and protein sequences and open reading frames from GenBank,
XML parser
SRS: Network Browser for Databanks
in Molecular Biology with TransFac - transcription factor binding
sites and more.
The
Eukaryotic Promoter Database (EPD) / Transcription Factor Database
(TFD)
Vector db: Sequences of
common vectors
Cloning
Vector Collection - collection of cloning vectors that can be
ordered.
XREFdb at NCBI - Cross-referencing
the Genetics of Model Organisms with Mammalian Phenotypes
species specific
List of Genomic Databases and Resources listed by Genus species
or common name
Databases of the Agricultural
Genome Information System (AGIS) - various organisms
Arabidopsis thaliana
Arabidopsis thaliana Database
(AtDB)
The TIGR Arabidopsis
thaliana Database
Bacillus subtilis
Non-Redundant
Database for Bacillus subtilis (NRSub)
SubtiList, the reference
dataset about genetics of Bacillus subtilis.
Caenorhabditis elegans
ACeDB (A Caenorhabditis
elegans DataBase) -
(see also)
Science Genome Maps VI:
Caenorhabditis elegans Genome Project
Drosophila melanogaster
Flybase: database of
genetic and molecular data for Drosophila melanogaster
Escherichia coli
The complete
E. coli K-12 Genome Sequence at the University of Wisconsin - Madison
Haemophilus influenzae
The TIGR Haemophilus
influenzae Rd Genome Database (HIDB)
EMBL GeneQuiz: automated analysis of Haemophilus influenzae proteins
Homo sapiens
A New Gene Map of
the Human Genome - GeneMap '98 at NCBI - radiation hybrid mapping
of 30,181 human gene-based markers
BioBase, The Danish Biotechnological
Database
CBIL public databases: EPODB
(erythropoesis genes), LENS
(EST clone identifiers), TESS
(search TransFac), MTIR
(muscle tissue regulation)
Genome Database (GDB): human
genetic map.
Mirrored at DKFZ
Human Gene Nomenclature
Committee - Links gene names to databases
An
STS-Based Map of the Human Genome
TAGC Project
- expression analysis in the immune system
The X chromosome mapping
project at the MPIMG with the Integrated X chromosome Database
(IXDB)
TIGR/Nature Human
Genome Directory Search
Methanococcus jannaschii
The TIGR Methanococcus
jannaschii Genome Database (MJDB)
GeneQuiz: automated analysis of Methanococcus jannaschii proteins
Mouse - Mus musculus
The European Collaborative Interspecific Mouse BackCross (EUCIB)
The Jackson Laboratory:
Mouse Genome Database (MGD), has a UK
mirror.
Mouse Development Atlas
Mycoplasma genitalium
The TIGR Mycoplasma
genitalium Genome Database (MGDB)
GeneQuiz: automated analysis of Mycoplasma genitalium proteins
Rat
RatMap - The Rat Genome Database
RATMAP 1997 at the Wellcome
Trust Centre, Oxford
Saccharomyces cerevisiae
Saccharomyces cerevisiae
Genome Database (SGD)
Yeast
Protein Database (YPD)
GeneQuiz: automated analysis of all available Saccharomyces cerevisiae
proteins
Zebrafish - Danio rerio
The Zebrafish Server - Oregon
FishScope -
zebrafish developmental biology movies
Zebrafish Information Server - South
Carolina
cDNA clone resources
The IMAGE consortium - the world's
largest public collection of genes
IMAGEne
- IMAGE has created clusters of all their cDNA clones.
EST Clone Resources
at the American Type Culture Collection
(ATCC)
dbEST -
Expressed Sequence Tags from a number of organisms.
Mammalian Gene
Collection (MGC) generates full-length complementary DNA (cDNA)
resources.
The EST machine:
Directory of links to bioinformatics resources for Expressed Sequence
Tags analysis
Integrated
Molecular Analysis of Gene Expression (IMAGE)
UniGene
Unique Human Gene Sequence Collection at
NCBI
WashU-Merck EST
Project.
Proteins
BIND
- Biomolecular Interaction Network Database
BIOBASE
- The Danish Biotechnological Database
BLOCKS - Protein classification.
Brenda - the Comprehensive
Enzyme Information System, query by EC number or enzyme name
The Brutlag Bioinformatics
Group - EMOTIF, EMATRIX, 3MOTIF
Center for Biological Sequence
Analysis (CBS) has
NetOglyc: predictions of O-glycosylation sites and other prediction
servers
Delta Mass: Mass changes after Modifications - for Mass Spectrometry
DALI server for comparing
protein structures in 3D
ExPASy, with SWISS-PROT, PROSITE,
SWISS-2DPAGE, SWISS-3DIMAGE, ENZYME and SeqAnalRef
The Homeobox Page
Human Protein Reference Database
- Comprehensive index on human protein function, regulation, interaction,
structure etc.
ImMunoGeneTics database (IMGT)
at LIGM, Montpellier
Ion Source - Mass spectrometry
and Biotechnology Resource, the Links are recommended
International Centre for
Genetic Engineering and Biotechnology (ICGEB)has SBASE
- a protein domain database.
MINT
- a relational database designed to store interactions between biological molecules.
Munich Institute for
Protein Sequences (MIPS) contributing to the PIR-International
Protein Sequence Database the European Yeast Functional Analysis
Program (Eurofan) the European Sequencing of Arabidopsis thaliana
(ESSA) the German Network for Functional Analysis in Yeast the European
Molecular Biology Network (EMBnet)
MOWSE
- search OWL for proteins which most likely correspond to your proteolytic
peptide masses.
NEB's Restriction Enzyme (and
Methylases) Database (REBASE)
ProDom protein
domain database
Protein Data Collection (PDB)
- at Brookhaven National Library
Pfam- Protein families
database of alignments and HMMs at the
Sanger Centre. Pfam
at WashU Dept. Genetics
PROWL
Protein sequence-structure
alignments: DSSP, PDBSELECT, PDBFINDER.
Structural Classification
of Proteins (SCoP): Comparisions to sequences with known structure.
Swiss Institute of Bioinformatics
with ProfileScan
SMART - Simple
Modular Architecture Research Tool of the
Bork group
DbBrowser of the
UCL Bioinformatics Institute. OWL, PRINTS (protein fingerprints)
and more.
UCSF Mass Spectrometry Facility
of the University of California
San Francisco
V BASE - Directory of Human V Gene Sequences at the MRC
Centre for Protein Engineering Cambridge, UK (MRC-CPE)
Yeast Protein Map
(YPM) - 2D Gel Map of Saccharomyces cerevisiae proteins
Link collections, News, Careers, Industry Guides
Amos' WWW links page
Antikörper online
- Der Marktplatz für Forschungsantikörper
Baylor College of Medicine
(BCM) with the BCM Search Launcher and the Biologist's Control
Panel
Biology Online - Learn
the basics, all the way through to advanced Biology
Bionity
- der Informationsdienst für die Biotechnologie und Pharmaindustrie
Cold Spring Harbor Laboratory
Press: BioSupplyNet biomedical research products and services
BioSpace - the hub site for
the world's most exciting industry
Biochemist On-Line
The informational website on BioChip Technologies
bioinformatik.de
Bio Netbook
- a searchable directory of Web pages for Biology
BIOSCI/Bionet Newsgroups
Bitesize Bio Blog
- the molecular and cell biologist's companion
The CMS-SDSC Molecular Biology Resource
Crystallography at SDSC
Crystallography
World Wide (IUCr)
Dechema - Deutsche Gesellschaft
für Chemisches Apparatewesen, Chemische Technik und Biotechnologie
e.V.
Genamics - comprehensive index of
scientific software, online journals, and more
Genetics Times - Genetics News and Research
icademic.org - Online Life Science Resources, Agronomy,
Biochemistry, Bioinformatics, Biology, Biotechnology, Botany, Chemistry, Food Science,
Paul N. Hengen's Molecular
Biology Homepage - Editor of biosci.methds-reagnts
HUM-MOLGEN Internet Communication
Forum
Sites for the
Molecular Biology - LINKS - links to databases, software , journals
and publishers etc.
NIH molbio links
Science Advisory Board
- worldwide panel of more than 5,000 life science and medical professionals
SciQuest - search vendors database
by product
SPAM Systematic Protein Annotation and Modeling
- Tools and Data Resources in Support of Structural Genomics
The-Science-Lab.com Biology resources
- directory of Biology related websites.
Verband Forschender Arzneimittelhersteller e.V. (VFA)
Labome
- Common Laboratory Services
Vadlo
- Search the Internet for protocols, databases, tools, Powerpoint slides.
Journals and Books
BioMedCentral - large collection
of free online journals, life science and medicine
Biochemistry and Molecular Biology Journals (James R. Beasley)
List of Chemistry
Journals
Direct Text Book - Find
low prices on New and Used textbooks
HighWire Press journal list
OCLC - Online Computer Library
Center
electronic journals
Electronic Journal of
Biotechnology (EJB)
Electronic Journal of Cognitive and
Brain Sciences (EJCBS)
Frontiers in Bioscience,
a journal and virtual library
InterJournal
Molecular Plant Biology
Neuroscience Net
WWW Journal of Biology
paper and electronic journals
Annual Reviews Biomedical
Sciences
BioTechniques
Cell, Immunity, Neuron
Central European Journal
of Chemistry
GenomeBiology - free access
to primary research articles
Journal of Biochemistry
Journal of Biochemistry and Molecular
Biology
Nature
Nucleic Acids Research
PNAS - Proceedings of the National
Academy of Sciences of the United States of America
Protein expression and purification
Protein Engineering
Protein Science of the
Protein Society
Science
Books
JF Lehmanns
Galapagos Books at BioMedNet
- Blackwell's Bookshop, Oxford Univ. Press, Solus Books
Genome Analysis
Series edited by Kay E. Davies
Polycrystal Book Service
Scientific Books and Journals
CPL Press Online Bookshop -
Scientific & Technical Books in the life sciences
Publishers
Academic Press - Ideal Appeal
Cold Spring Harbor Laboratory
(CSHL) Press
Elsevier Science publications
- Science Direct - European Server
John Wiley & Sons
Oxford University Press
Companies
A B C D
E F G H
I J K L
M N O P
Q R S T
U V W X
Y Z
3M
Abbott
Abgent - antibodies, peptides,
and protein expression
Addgene - a non-profit organization for sharing of plasmid constructs
Affymetrix
Agowa - Magnetic separation, sequencing,
genomics, bioinformatics
Agouron Pharmaceuticals, Inc.
Allergan, Inc.
Alpha Bioverfahrenstechnik -
Fermentation, cell culture applications
Altana Pharma
Ambion - the RNA company
Amersham Biosciences
Amgen
AnalytiCon Discovery
Argene Inc.
AstraZeneca
Astra Merck
Asys Hitech - microplate
reader, washer, dispenser
Aventis Pasteur
Avidity - expression system for
biotinylated proteins
Astex technology - fragment-based drug discovery
Axys Pharmaceuticals - drug discovery
BASF test2
Baxter International Inc.
Bayer - overview
Beckman Coulter - centrifugation,
capillary electrophoresis,spectroscopy, HPLC, ...
Berkeley Antibody Company (BAbCO)
Beiersdorf
Berlex Laboratories, Inc. (Betaseron)
BIO 101
biodatabases.com - database
development
Biogen
BioM - Munich BioTech Development
BIO-RAD
Biostep Labor- und Systemtechnik
- Radioaktivitäts-Messtechnik, Bio-Imaging, Strahlenschutz
BioteCon
Bio-Technical Resources
- research & development, bioprocess scale-up, pilot scale manufacturing,
technology, economic assessments. Bacillus licheniformis, Hansenula
polymorpha Bio-Tek Instruments, Inc.
Biovation
- protein engineering company specialising in functional genomics
Biozym
BMG Labtech - The Microplate Reader Specialists
Boehringer-Ingelheim,
Boehringer Ingelheim Bioproducts
Boehringer Mannheim
Brand
Bristol-Myers Squibb
Bruker - EPR, GC, NMR, FT-IR,
MS, AXS
Cadus Pharmaceuticals a biotechnology
company
Calorimetry Sciences
Corporation (CSC) - calorimeters
Cambridge Research Biochemicals - custom peptides and antibodies
Caremark - MedPartners
C.B.S. Scientific - electrophoresis
equipment
Celartia Cell Culture - Petaka
cell culture media and supplies
Chemicon International - Cymbus
monoclonal antibodies
Ciphergen SELDI - ProteinChip
arrays for Functional Genomics.
Clontech - Innovative tools
to accelerate discovery
Connaught
DASGIP - parallel
fermentation and cultivation systems
Douglas instruments - Success
in protein crystallisation
Dynal - supplier of the biomagnetic
separation tool
Edge BioSystems
(former AGTC)
Eppendorf
Eisai
Entelechon.com - Die Genschmiede,
the gene forge
GATC
- sequencing service
Geneart - gene synthesis, recombinant gene libraries, expression optimization and genetic immunization
Gene Codes Corporation - Sequencher
sequence analysis program
Genencor - delivering innovation
through biotechnology
Genentech
Gene Logic - accelerated drug
discovery
Genetics Computer Group
Genetix - picking, gridding,
replicating, arraying and microarraying automated solutions
GenSolutions - online
access to gene sequences and homology and expression data discovered
by Hyseq
Genome Pharmaceuticals Corporation
(GPC)
Genome Systems Inc. - cDNA
library screening service
Genset - genomics research for
discovery of genes involved in common diseases and drug response
genoPrint - in vitro protein
interaction screening
Gentronics - BTX, Electroporation
Genzyme a biotechnology and
health care products company
Gigahertz-Optik - UV-Vis-NIR
radiometers, photometers, color meters, laser / optical power meters,
integrating spheres, R/T instruments and optically diffuse materials
Gilson
Glaucus Proteomics B.V. -
peptide, protein and antibody arrays
Glaxo Wellcome
Glen Research
Glyko - putting carbohydrate
analysis within everyone's reach...
Grace Biolabs
China GreatVista Chemicals -
Manufacturer and supplier of biochemicals, agrochemicals, amino acids,
pharmaceutical intermediates, enzyme supplements, herb extracts, dyes and pigments,
and industrial chemicals
Grünenthal
Hampton
Research - Solutions for crystal growth
Herolab - lab equipment
Hoechst
Hitachi Software
Human Genome Sciences (HGS)
Hyseq
IBA - Institut für
Bioanalytik - Strep-TagII Expression System
Immunex - developing immune
system science to protect human health
Immunometrics - immunoassay
kits, reagents and some equipment
Incyte - bioinformatics expertise
and high-throughput DNA sequencing
Infors - Fermenters, shakers, software
InViTek - DNA purification and
sequencing
Invitrogen
Integra Biosciences
Interactiva - Oligo and peptide
synthesis
Janssen-Cilag
B.V.
JBL Scientific
Johnson & Johnson
Klinge-Pharma
GmbH
Knoll - BASF Pharma
LTF-Labortechnik
Fröbel
LabSystems - Laboratory Information
Management Systems (LIMS), Chromatography Data Systems (CDS) and instrument
integration systems
Lightools Research
Life Technologies, producer
of Gibco BRL products
Lilly
Link Technologies - Molecular
Biology Reagents
LION - sequencing, bioinformatics,
sequence interpretation and functional analysis
Marsh Bioproducts - robotic
equipment, small apparatus and laboratory consumables for laboratories
MD Biosciences - antibodies,
immuno and cell biology assays, eukaryotic enzymes and proteins, arthritis,
apoptosis and alzheimers research products
MBI Fermentas
MedProbe - DNA synthesis and
sequencing, peptides, antibodies
Merck & Co.
Merck KG
Metabion - oligonucleotides
Metkinen - DNA and RNA
Micron Separations MSI - Filtration
Millennium Pharmaceuticals
Millipore
Molecular Dynamics
MoBiTec
Molecular Probes
Monsanto
MWG-Biotech
New Brunswick Scientific
New England Biolabs (NEB)
Novagen
Novartis
Novo Nordisk
Ocimum Biosolutions -
Genomics, Proteomics, Bioinformatics and Custom Contract Services and LIMS
Ohmeda
Omega Optical
Onyx Pharmaceuticals - novel
therapeutics based on the genetics of human disease
Organon
Osmonics/Poretics - filters
Otsuka Pharmaceutical Corp.
Oxford Molecular Group
Packard Instruments
Pall Corporation - Filtration. Separation.
Solution.
Pall Gelman Sciences - Filtration
and Separations products
PanVera - fluorescent polarization,
recombinant human proteins, ...
Parke-Davis
Perkin-Elmer - analytical
instruments and life science systems
PerSeptive
Pfizer
PHARMaGENE - Human Tissues
Pharmacia
PharMingen
Photometrics - high-performance
CCD digital cameras
Pierce
Polyfiltronics - the
pioneer in intelligent microplates
Premier Biosoft - Software for molecular biologists
Primm Labs
Proctor & Gamble
Progenitor - genomic leads
and targets for new pharmaceuticals
Prot@gen - Proteomics, 2D gel
electrophoresis, mass spectrometry
Protein Sciences Corporation
(PCS) - Vaccines and Protein Therapeutics, GenXpress Baculovirus
expression
Protein Solutions Incorporated
- Light Scattering Products
Promega
Qiagen
Quantum Biotechnologies
R &
D Laboratories
Redasoft - Windows software
for plasmid maps and sequence analysis
Research Genetics
Research Organics
Roche
Rohm & Haas Co.
Roxane - a subsidiary of the
Boehringer Ingelheim Corporation
Carl Roth
Sartorius
- Weighing, Separation, Bearing Technology
Schering - Schering-Plough
Research Institute
Santa Cruz Biotechnology: antibodies
for signal transduction research
Schott - glass
Schwarz Pharma
Sci-Ed Software
Scientific Resources
Schleicher & Schuell - S&S
Europe - Filters
ScyTek
Sequenom - DNA analysis tools
SEQwright DNA Sequencing
Seradyn Particle Technology
Sigma, Aldrich, Fluka, Supelco
SmithKline Beecham
Socorex
Solid Phase Sciences
Solvay - chemicals, pharmaceuticals
and related products and services
Sonics and Materials
- Ultrasonic applications
Spectronic Instruments
- spectrophotometers, SLM-AMINCO® fluorescence instruments, FRENCH
Press, MINIMATCH color spectrophotometers
Stratagene
Takara
Tosoh Biosep
- TosoHaas Chromatography media
Tanabe Research Laboratories USA (TRL)
Texas Biotech Corp. (TBC) - discovery,
development and commercialization of drugs
Textco, Inc.
UltraLum, Inc.
Upstate Biotechnology
UVP Ultra-Violet Products
VayTek, Inc.
VMA-Getzmann GmbH - Dispermat
and Torusmill bead mills
V&P Scientific - innovative
(manual) tools for high throughput research
Westing Software
Whatman - Leading the Way in
Separations Technology
Warner-Lambert
Wyatt Technology
Xantos - cDNA
library technology, rapid identification of disease-relevant targets
and the discovery of better drugs
Zinsser
Analytic - Life Science Automation
Zyomix - Protein microarrays
Author: Konrad Büssow,
buessow@molgen.mpg.de
Last modified: Aug 2009
I will include new links on request. Otherwise, this page is not being updated regularly.
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