Workshop program

Introduction

09.00-09.15    Ralf Herwig, Max Planck Institute for Molecular Genetics, Berlin:

                        “The Network of Excellence EMBRACE – an introduction”

Part 1 „Web services and workflow systems“

09.15-09.45    Hamish McWilliam, EBI, Hinxton:

“Introduction to web services”

09.45-10.15    Katy Wolstencroft, University of Manchester, Manchester:

“The TAVERNA workflow system”

10.15-10.30    Coffee break

Part 2 “Automated frameworks for systems biology research”

10.30-11.00    Andrei Zinovyev, Institut Curie, Paris:

"BiNoM: a tool for manipulating and analysis of biological networks"

11.00-11.30    Atanas Kamburov, Max Planck Institute for Molecular Genetics, Berlin:                                

“ConsensusPathwayDatabase – matching and integrating pathway information”

11.30-12.00    Christophe Roos, Medicel Oi, Helsinki:

                        “Integrated datasets through reference objects and networks”

12.00-12.30        Christophe Blanchet, CNRS - Institut de Biologie et Chimie des Proteines, Lyon

“Grid computing for System Biology – a user perspective”

12.30-14.00    Lunch break

Part 3 “Systems biology databases and modelling tools”

14.00-14.30    Esther Schmidt, EBI, Hinxton:

“Reactome - a human pathway knowledgebase”

14.30-15.00    Christoph Wierling, Max Planck Institute for Molecular Genetics, Berlin:

“Modelling and simulation of biological processes with PyBioS”

15.00-15.30    Pedro Mendes, University of Manchester:

“Web services using the COPASI system”                                         

15.30-15.45        Coffee break

Part 4 “What’s next?”

15.45-17.00    General discussion and Summary